Changes between Version 14 and Version 15 of DDBJ-KEGG-PDBj/Results

Timestamp:

2009/06/29 15:33:57 (15 years ago)

Author:

akinjo

Comment:

--

DDBJ-KEGG-PDBj/Results

@@ -3 +3 @@
  * For the details of the project, see [wiki:DDBJ-KEGG-PDBj].
 
-== for paper ==
+== begin paper ==
 (The following is a draft of a part of a paper to be submitted.)
 
-=== A DDBJ-KEGG-PDBj workflow: from pathways to protein-protein interactions ==
+=== A DDBJ-KEGG-PDBj workflow: from pathways to protein-protein interactions ===
 The objective of this working group is to examine the potentials and obstacles of web services by implementing a real-life use case.
 The goal of the workflow is to enumerate possible physical protein-protein interactions among proteins in a biochemical pathway.
@@ -16 +16 @@
 (5) For each species in the phylogenetic profile, run BLAST searches for each amino acid sequence against PDB.
 (6) If two amino acid sequences (of the same species) have homologs in the same PDB entry, they are inferred to be in possible contact, and hence predicted to be an interacting pair.
+
+To implement the workflow outlined above, we have used the SOAP and REST APIs of KEGG (http://www.genome.jp/kegg/soap/), DDBJ (http://www.xml.nig.ac.jp/) and PDBj.
+== end paper ==
 
 == Members ==