| 40 | | * kozo-ni's usecase |
| 41 | | * retrieve a organism's all metabolic reactions from KEGG |
| 42 | | * convert node format from [compound -> enzyme -> compound] to [compound -> compound] or [enzyme -> enzyme] like following paper |
| 43 | | * http://bioinformatics.oxfordjournals.org/cgi/content/full/22/14/1767 |
| 44 | | * calculate betweeneth and find bottlenecks (currently I use CentiScaPe plugin or igraph[R library]) |
| 45 | | * map gene expression to enzyme |
| | 40 | * kozo-ni(kozo-ni@is.naist.jp) |
| | 41 | * usecase |
| | 42 | * retrieve an organism's all metabolic reactions from KEGG |
| | 43 | * convert node format from [compound -> enzyme -> compound] to [compound -> compound] or [enzyme -> enzyme] like following paper |
| | 44 | * http://bioinformatics.oxfordjournals.org/cgi/content/full/22/14/1767 |
| | 45 | * calculate betweeneth and find bottlenecks (currently I use CentiScaPe plugin or igraph[R library]) |
| | 46 | * map gene expression to enzyme |
| | 47 | * data |
| | 48 | * affymetrix gene-chip expression data |
| | 49 | * functionality needs |
| | 50 | * get an organism's all metabolic reactions from KEGG |
| | 51 | * draw enzyme or compound centric network. (In enzyme centric network, enzyme nodes share a common compound. In compound centric network, compound nodes share a common enzyme.) |
