Satellite meeting for Data Visualization

Topics

Visualization for large datasets including:

• Protein-Protein Interaction
• Pathways
• Genome
• other

This includes development of easy-to-use backend data services such as

• Interaction network data service
• Annotation service

Chairperson

• Bruno Aranda (baranda@…)

Participants

• Keichiro Ono (kono@…)
• Soichi Ogishima (ogishima@…)
• Kozo Nishida (kozo-ni@…)
• Add yourself! :)

Targets

• Last yeat in the hackathon, we have developed a common query web service API for interaction databases called PSICQUIC. Some of the service providers have published their service and now we should think about how to use the service in client and make them easy-to-use for all service users.
• The goal of this group is the following:
  • Make backend service more easy-to-use client software
    • Cleaner API
    • REST support
  • Create intuitive UI for client software
  • Design more sphisticated visualization

Date

• Most of the time during the hackathon. Feel free to join anytime :-)

Room

• Chura Hall (3F)

Presentations

Fill:

• Name of the presenter
  • Title of the talk
  • Attachments (PPT or PDF slides etc.)

Notes

• Software
  • Cytoscape
  • GraphViz?
  • Ubigraph
  • E-cell 3D
  • N-Browse
  • BioCichlid?

• Data Provider
  • Interactions
    • IntAct?
    • MINT
    • BioGRID
    • STRING
  • Pathways
    • KEGG
    • Reactome
    • BRENDA
  • Annotations(service)
    • Biomart
    • Entrez Gene
• blah, blah, blah - YOUR NAME

Results

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TODOs

• Visualize time-series microarray data using Cytoscape
  • Animation (using dynamic layout)
• More biologically meaningful graph layout