| 87 | | * Generic ID mapping for GenMAPP Data Import plugin ( by Isaac Ho / UCSF ) |
| 88 | | GenMAPP-CS is a next-generation implementation of GenMAPP, a metabolic pathway visualization tool, as a set of plugins for Cytoscape. This week I worked on creating a way to map the ids of any network based on GenMAPP-supported data libraries ( e.g, KEGG, Affy, Ensembl ) to the ids of any expression data based on these libraries. The solution involves converting all ids to Ensembl IDs upon import by calling a webservice on GenMAPP's servers which query their MySQL dbs. Kei Ono and I discussed issues such as the best place in the plugin code to place the responsibility for id conversion. The current status is about 60% complete on this task. |
| | 87 | * Generic ID mapping for GenMAPP Data Import plugin ( Isaac Ho ) |
| | 88 | * maps the ids of any network based on GenMAPP-supported data libraries ( e.g, KEGG, Affy, Ensembl ) to the ids of any expression data based on these libraries, by converting all ids to Ensembl |
| | 89 | * Kei Ono and I discussed issues such as the best place in the plugin code to place the responsibility for id conversion. |
| | 90 | * The current status is about 60% complete on this task. |
