Changes between Version 36 and Version 37 of SatelliteVisualization

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Timestamp:
2009/03/20 15:23:50 (16 years ago)
Author:
kono
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  • SatelliteVisualization

    v36 v37  
    9494 * PSICQUIC: Bruno implemented a REST version of the PSICQUIC service. It returns the standard PSI-MITAB format. 
    9595 
    96  * Keiichiro Ono and Kozo Nishida has released OSGi-fied version of Processing core.  It is available here (maven repository): 
     96 * Keiichiro Ono and Kozo Nishida have released and tested OSGi-fied version of Processing core.  It is available here (maven repository): 
    9797    * http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/processing-core-osgi/ 
    9898    * Confirmed to work with Apache Felix 1.4.1 + Spring Framework 2.5 + Spring Dynamic Modules 1.1.2 
    … …  
    103103== TODOs == 
    104104 
     105=== Rendering === 
    105106 * Build a flexible toolkit for biological data visualization.  Some of the works above are done by Processing and it is a good candidate for building such toolkit. 
    106107    * OpenGL java library (JOGL) should be converted to OSGi for Cytoscape + Processing for large-scale visualization to utilize hardware-acceralation. 
    107108    * Integrate Processing rendering engine to Cytoscape for more flexible visualization, including animation, 3D, etc. 
    108   
    109  * Make BioMart Cytoscape plugin into SOAP/REST hybrid for nicer GUI and performance.  Still Biomart SOAP service has problems if developer uses Java code generator (WSDL2Java/CXF) 
     109    * Genome-Browser also can take advantage of this type of toolkit. 
     110      * What's 
     111 
    110112 
    111113 * Visualize time-series microarray data using Cytoscape 
    112114   * Animation (using dynamic layout) 
     115 
    113116 * More biologically meaningful graph layout 
    114    * List up several methods of graph layout 
     117   * List up several methods of graph layout  
     118 
     119=== Backend Data Services === 
     120 * Make BioMart Cytoscape plugin into SOAP/REST hybrid for nicer GUI and performance.  Still Biomart SOAP service has problems if developer uses Java code generator (WSDL2Java/CXF) 
     121 * Use DAS and other services for streaming data for visualization (just like genoDive does).