| | 60 | |
| | 61 | Question |
| | 62 | - Takeshi asked about how to annoate in-house data with comparing with public genome data using BioMart. |
| | 63 | - For example, how to annotate Halocynthia roretzi or Molgula tectiformis ESTs comparing with Ciona intestinalis and Ciona savigni using BioMart. |
| | 64 | Answer |
| | 65 | - Convert Halocynthia data into BioMart format. Install BioMart server locally. Then merge public DB and local data together. |
| | 66 | - BioMart format is simple. |
| | 67 | |
| | 68 | |
| | 69 | Takeshi present an example |
| | 70 | - minor animal (ex, H.roretzi, closest animal of Ciona) |
| | 71 | - how can analyze Halocynthia roretzi and M.tectiformis which are rare annotation. |
| | 72 | - type of data is ESTs, assembled EST cluster,,,etc,, |
| | 73 | - potential flow: BioMart -> ANNOTATOR -> TogoDB |
| | 74 | |
| | 75 | [[Image(bh2009-usecase_1.pdf)]] |
| | 76 | |
| 83 | | Question |
| 84 | | - Takeshi asked about how to annoate in-house data with comparing with public genome data using BioMart. |
| 85 | | - For example, how to annotate Halocynthia roretzi or Molgula tectiformis ESTs comparing with Ciona intestinalis and Ciona savigni using BioMart. |
| 86 | | Answer |
| 87 | | - Convert Halocynthia data into BioMart format. Install BioMart server locally. Then merge public DB and local data together. |
| 88 | | - BioMart format is simple. |
| 89 | | |
| 90 | | |
| 91 | | Takeshi present an example |
| 92 | | - minor animal (ex, H.roretzi, closest animal of Ciona) |
| 93 | | - how can analyze Halocynthia roretzi and M.tectiformis which are rare annotation. |
| 94 | | - type of data is ESTs, assembled EST cluster,,,etc,, |
| 95 | | - potential flow: BioMart -> ANNOTATOR -> TogoDB |
| 96 | | |
| 97 | | [[Image(bh2009-usecase.pdf)]] |
