Changes between Version 8 and Version 9 of SatelliteUseCases

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Timestamp:
2009/03/20 00:26:51 (16 years ago)
Author:
vachiranee
Comment:

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  • SatelliteUseCases

    v8 v9  
    4848 
    4949 
    50 ''' 
    51 Softwares'''  
     50'''Softwares'''  
    5251 
    53521) BioMart[[BR]] 
    … …  
    5958== Results == 
    6059   
    61 ANNOTATOR currently cannot analyse SNPs data  
    62     - Galaxy (http://galaxyproject.org) and RGenetics (http://rgenetics.org/) 
     60'''*SNPs data'''[[BR]] 
     61 
     62ANNOTATOR currently cannot analyse SNPs data [[BR]] 
     63Galaxy (http://galaxyproject.org) and RGenetics (http://rgenetics.org/) 
    6364        quality control, ancestry, case-control analysis, tdt, oter statistical tests 
    64     - BioMart 
    6565 
    66 BioMart 
    67 - have to know dataset, filter, attribute 
    68 - can use Perl API,.. 
    69 - Martview 
    70 - DAS access 
    71 - Martview 
    72 - can set up server and use in-house 
     66'''*Multifasta format (amino acid sequences)'''[[BR]] 
     67 
     68'''*Multifasta format (nucleotide sequences)''' [[BR]] 
     69 
     70'''*Genome data'''[[BR]] 
    7371 
    7472Question 
    … …  
    111109== TODOs == 
    112110 
     111 
     112== Other requests from use case to developper of any WS == 
     113 
     114- (TO: IntAct, Cytoscape) It would be nice if user can obtain PPIs which are expressed in tissues the option of getting data from any tissue (From: Vachiranee)