Changes between Version 13 and Version 14 of SatelliteTranscriptionRegulation
- Timestamp:
- 2009/03/20 13:38:53 (16 years ago)
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SatelliteTranscriptionRegulation
v13 v14 22 22 * Yulia Kovarskaya 23 23 24 [[BR]]25 ...and please join us and add your name!!26 24 27 == Date ==25 == Objective == 28 26 29 * 2009/3/17 11:00-12:00 30 * 2009/3/18 10:00-11:00 31 32 33 == Room == 34 35 * Chura hall (3F) 36 37 == TODOs == 38 Transcriptional regulation 39 Genomic variation(SNP, CNV….) using NGS 40 Data, sequence 41 Variation detection, 42 Annotation 43 44 Purpose: Make a unified solution tool that biologists want in their functional, molecular studies. -Identify feasible techniques and economic solutions for them. 27 Make a unified solution tool that biologists want in their functional, molecular studies. -Identify feasible techniques and economic solutions for them. 45 28 46 29 The questions that should be addressed. … … 82 65 How: Define each question in terms of biologists’ interests. Describe the limits of each question. Find the best or second best tools for each question. How to combine the questions for the sake of biologists (input and output data) 83 66 84 Find out the best example of these kind of approaches (ex. SRS of Lions, )85 67 86 * check [http://sysbio.kribb.re.kr:8080/fesd/ FESD II] schema 87 * check Yamashita-san code for TFBS analysis 68 == Proposed Solution == 88 69 89 == Some decisions == 70 Use DAS! 71 * You can find an [http://www.slideshare.net/alabarga/introduction-to-distributed-annotation-system-das introduction for the DAS system here] 90 72 91 * Implement a DAS layer for FESD II and the TFBS prediction systems 73 == Results == 92 74 93 * You can find an [http://www.slideshare.net/alabarga/introduction-to-distributed-annotation-system-das introduction for the DAS system here] 75 * Implement a DAS layer for [http://sysbio.kribb.re.kr:8080/fesd/ FESD II] and the TFBS prediction systems 76 77 94 78 95 79 * Implement a web application that computes the enrichment of the TFBS for a list of genes or proteins, and present the results using DASTY … … 101 85 [http://beta.gepas.bioinfo.cipf.es/pupasuite/www/index.jsp] 102 86 103 The DAS workshop 2009 is just over, and there was some cool stuff there we could use104 87 105 [http://www.biodas.org/wiki/DASworkshop200903]106 88 107 89
