| Version 8 (modified by mn, 16 years ago) |
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Satellite meeting for Sequence analysis tools from the next generation sequencer
Topics
To share our knowledges about sequence analysis tools. Please write what you know about the tools.
Also see Bioinformatics for Next Generation Sequencing virtual issue -- yaskaz@ddbj (thanks to ichan) and Table 3 of Jay Shendure & Hanlee Ji., Next-generation DNA sequencing, Nature Biotech. (thanks to hinaichigo)
Mapping tools
Maq
ELAND
BOWTIE Ultra-short reads, Burrows-Wheeler index.
Lasergene
GSrapper
SHRiMP supports letter-space (454/Solexa), color-space (Solid) and Helicos 2-pass space. Spaced-seeds followed by S-W.
Lastz Blast(z) variant. Has parameter settings tuned for 454 and Solexa mapping for both reference based assembly and variant discovery.
EMBOSS
Assemble tools
Velvet
EMBOSS
