| Version 5 (modified by ryamasi, 16 years ago) |
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Satellite meeting for Sequence analysis tools from the next generation sequencer
Topics
To share our knowledges about sequence analysis tools. Please write what you know about the tools.
Mapping tools
Maq
ELAND
BOWTIE Ultra-short reads, Burrows-Wheeler index.
Lasergene
GSrapper
SHRiMP supports letter-space (454/Solexa), color-space (Solid) and Helicos 2-pass space. Spaced-seeds followed by S-W.
Lastz Blast(z) variant. Has parameter settings tuned for 454 and Solexa mapping for both reference based assembly and variant discovery.
Assemble tools
Velvet
