| 14 | | GSrapper[[BR]] |
| | 14 | [http://www.454.com/products-solutions/analysis-tools/gs-reference-mapper.asp GSMapper] |
| | 15 | * Map reads to any reference genome and generate a consensus sequence. |
| | 16 | * Easily view all differences compared to the reference sequence with automatic output to separate files: Insertions (blocks up to 50 bases), Deletions (blocks up to 50 bases), SNPs |
| | 17 | * Quickly identify high confidence difference compared to the reference genome, which are singled out in a separate file. |
| | 18 | * Compare large, complex genomes of any size including: resequencing of whole genomes from humans, plants, yeasts, bacteria, fungi, viruses, YACs, BACs, fosmids |
| | 19 | * Data outputs: fna.file (sequence of contigs, FASTA format), qual.file (corresponding Phred equivalent quality score), ace.file (consensus alignment of the reads against a given reference sequence) |
| | 20 | [[BR]] |
