Changes between Version 6 and Version 7 of SatelliteSeqAnalysis

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Timestamp:
2009/03/19 14:51:59 (16 years ago)
Author:
yn
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  • SatelliteSeqAnalysis

    v6 v7  
    1414GSrapper[[BR]] 
    1515[http://compbio.cs.toronto.edu/shrimp/ SHRiMP] supports letter-space (454/Solexa), color-space (Solid) and Helicos 2-pass space. Spaced-seeds followed by S-W. [[BR]] 
    16 [http://bx.psu.edu/miller_lab/dist/README.lastz-1.01.50/README.lastz-1.01.50.html Lastz] Blast(z) variant. Has parameter settings tuned for 454 and Solexa mapping for both reference based assembly and variant discovery.  
    17  
     16[http://bx.psu.edu/miller_lab/dist/README.lastz-1.01.50/README.lastz-1.01.50.html Lastz] Blast(z) variant. Has parameter settings tuned for 454 and Solexa mapping for both reference based assembly and variant discovery. [[BR]] 
     17EMBOSS 
    1818 
    1919== Assemble tools == 
    2020Velvet[[BR]] 
    21  
     21EMBOSS 
    2222 
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