Changes between Version 3 and Version 4 of SatelliteSeqAnalysis

Show
Ignore:
Timestamp:
2009/03/18 09:34:05 (16 years ago)
Author:
james.taylor
Comment:

--

Legend:

Unmodified
Added
Removed
Modified

  • SatelliteSeqAnalysis

    v3 v4  
    99Maq[[BR]] 
    1010ELAND[[BR]] 
    11 BOWTIE[[BR]] 
     11[http://bowtie-bio.sourceforge.net/index.shtml BOWTIE] Ultra-short reads, Burrows-Wheeler index. [[BR]] 
    1212Lasergene[[BR]] 
    1313GSrapper[[BR]] 
     14[http://compbio.cs.toronto.edu/shrimp/ SHRiMP] supports letter-space (454/Solexa), color-space (Solid) and Helicos 2-pass space. Spaced-seeds followed by S-W. [[BR]] 
     15[http://bx.psu.edu/miller_lab/dist/README.lastz-1.01.50/README.lastz-1.01.50.html Lastz] Blast(z) variant. Has parameter settings tuned for 454 and Solexa mapping for both reference based assembly and variant discovery.  
     16 
    1417 
    1518== Targets ==