Changes between Version 21 and Version 22 of SatelliteSeqAnalysis

Timestamp:

2009/03/20 17:10:35 (16 years ago)

Author:

bonnalraoul

Comment:

--

SatelliteSeqAnalysis

@@ -21 +21 @@
 [http://compbio.cs.toronto.edu/shrimp/ SHRiMP] supports letter-space (454/Solexa), color-space (Solid) and Helicos 2-pass space. Spaced-seeds followed by S-W. [[BR]]
 [http://bx.psu.edu/miller_lab/dist/README.lastz-1.01.50/README.lastz-1.01.50.html Lastz] Blast(z) variant. Has parameter settings tuned for 454 and Solexa mapping for both reference based assembly and variant discovery. [[BR]]
-EMBOSS
+EMBOSS [[BR]]
+many mores.... but never used.
 
 == Assemble tools ==
@@ -33 +34 @@
     * Data outputs: fna.file (sequence of contigs, FASTA format), qual.file (corresponding Phred equivalent quality score), ace.file (alignment of the reads to contig sequence)
 [[BR]]
+[http://www.dnastar.com/ Lasergene] Support 454/Solexa. GUI interface for displaying alignments and contigs organization (scaffolds) [[BR]]
 Velvet[[BR]]
-EMBOSS
+EMBOSS [[BR]]
+many mores.... but never used.
 
 == Platforms ==