Changes between Version 36 and Version 37 of SatelliteLiterature

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Timestamp:
2009/03/20 13:31:02 (16 years ago)
Author:
alberto.labarga
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  • SatelliteLiterature

    v36 v37  
    3636 
    3737 
     38'''Collaborative anotation tools''' 
     39 
     40  * [http://a.kazusa.or.jp/] 
     41  * [https://addons.mozilla.org/en-US/firefox/addon/6219] 
     42  * [http://www.shiftspace.org/] 
     43  * [http://www-tsujii.is.s.u-tokyo.ac.jp/GENIA/home/wiki.cgi?page=XConc+Suite] 
     44 
    3845'''Assessment of text mining tools (both engines and web services)''' 
    3946 
    … …  
    5562(This shows the front-end of a text-mining system I (Tobias) developed previously. It has overlapped tagging as a result of multi-class NER and fulltext search) 
    5663 
    57  
    58 The questions that this satellite meeting could try to answer are: 
    59  
    60 '''For developers:''' 
    61  
    62   * What are the missing elements for better integration of the different services? 
    63  
    64   * Which are the best formats for information extraction data exchange (ieXML, RDF)? 
    65  
    66   * Which components of the text minig architecture can be moved from to the server to the client (AJAX, browser plugins)? 
    67  
    68   * Is it possible to build portable text mining systems? Can systems be adapted to specific domains and specific tasks without the assistance of an experienced language processing specialist? 
    69  
    70   * How can we cope with full text data (format / copyright)?  
    71  
    72 '''For users:''' 
    73  
    74  * What is the actual utility of text mining in the workflows of the various communities of potential users—model organism database curators, bedside clinicians, biologists utilizing high-throughput experimental assays, hospital billing departments? 
    75  
    76  * How usable are biomedical text mining applications? How does the application fit into the workflow of a complex bioinformatics pipeline? What kind of training does a bioscientist require to be able to use an application? 
    77  
    78  * How robust and reliable are biomedical text mining applications?  
    79  
    80  
    81 == Chairperson == 
    82  
     64== Attendees == 
    8365 * [http://www.linkedin.com/in/albertolabarga Alberto Labarga] ([http://www.ebi.ac.uk/webservices EBI], [http://www.ebi.ac.uk/dasty Dasty], [http://www.scientifik.info/elsevier Elsevier Grand Challenge],  Univ. of Granada, Spain) 
    84  
    85 == Targets == 
    86  
    87  * Developers of literature and text mining related software and services 
    88  * End-users of these services 
    89  
    90 == Attendees == 
    91  
    9266 * Yulia Kovarskaya 
    9367 * Hong-Woo Chun 
    … …  
    9872 * Atsuko Yamaguchi 
    9973 
    100 == Date == 
    10174 
    102  * 2009/3/17 13:00-17:00 
    103  
    104 == Room == 
    105  
    106  * Seminar Room (1F) 
    107  
    108 == Presentations == 
     75== Results == 
    10976 * Alberto Labarga  
    11077    {{{ 
    … …  
    11582 * Hong-Woo Chun 
    11683   * Introduction of Wired-Marker and XConc that are annotation tools and publicly available to use. 
    117   
    118 == Results == 
    119  
    120  * We did an exploration of existing services 
    12184 * We explored the use of scifoaf (Pierre Lindenbaum) -> We need unique IDs (URI) for authors in publications! 
    12285 * We implemented some clients for [http://bcms.bioinfo.cnio.es/xmlrpc/ XML-RPC interface of BCMS] and [http://ubio.bioinfo.cnio.es/biotools/iHOP/ iHOP webservices] 
    12386 * We reviewed different solutions for collaborative anotations 
    124   * [http://a.kazusa.or.jp/] 
    125   * [https://addons.mozilla.org/en-US/firefox/addon/6219] 
    126   * [http://www.shiftspace.org/] 
    127   * [http://www-tsujii.is.s.u-tokyo.ac.jp/GENIA/home/wiki.cgi?page=XConc+Suite] 
     87 
    12888 
    12989== TODOs ==