Satellite meeting for GlycoBiology?

Topics

Create and discuss about Taverna wolkflows for GycoBiology?.

Keywords:

• GlycoEpitopeDB  http://www.glyco.is.ritsumei.ac.jp/epitope/
• H-InvDB  http://h-invitational.jp/
• RINGS  http://rings.t.soka.ac.jp/
• Consortium for Functional Glycomics (CFG)  http://www.functionalglycomics.org
• GlycomeDB  http://www.glycome-db.org
• (GlycoGeneDB)  http://riodb.ibase.aist.go.jp/rcmg/ggdb/

• relations to diseases and SNPs
  • OMIM  http://www.ncbi.nlm.nih.gov/sites/entrez?db=omim

Chairperson

• Kiyoko F. Aoki-Kinoshita

Members

• Shujiro Okuda
• Shin Kawano
• Chisato Yamasaki

Targets

• Develop and register web services on BioMoby? such that glycobiologists can create workflows for glycobiology research.
  • GlycoEpitopeDB:
    • Query GlycoEpitope? DB using a query and retrieve all IDs of entries containing the keyword.
    • Retrieve glycan structures in IUPAC format using GlycoEpitope? IDs.
  • RINGS:
    • Convert a glycan structure in IUPAC format into KCF format, by which glycan structure queries can be made.

• Create a workflow for analyzing glyco-gene-related diseases: Use OMIM to search for diseases related to loci of human homologs of target genes from other species, such as fruit fly. Retrieve any SNPs that are known to be related.

Date

Edit:

• 2009/3/19 10:00-12:00

Hacking Taverna and BioMoby?

Room

Select one:

• Chura Hall (3F)