Changes between Version 8 and Version 9 of SatelliteGlycoBiology

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Timestamp:
2009/03/20 14:22:53 (16 years ago)
Author:
kkiyoko
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  • SatelliteGlycoBiology

    v8 v9  
    3838 * Create a workflow for analyzing glyco-gene-related diseases:  Use OMIM to search for diseases related to loci of human homologs of target genes from other species, such as fruit fly.  Retrieve any SNPs that are known to be related. 
    3939 
    40 == Date == 
    4140 
    42 Edit: 
     41==== Summary ==== 
    4342 
    44  * 2009/3/19 10:00-12:00 
     43It took longer than expected, but we were able to develop the glycan structure workflow with an additional step: retrieve similar 
     44glycan structures to the retrieved ones.  GlycoEpitope will continue to develop other web services with which to build workflows. 
    4545 
    46 ==== Hacking Taverna and BioMoby ==== 
     46The disease-related workflow was able to retrieve Hinv entries containing the OMIM Ids which were retrieved from OMIM for entries containing a particular keyword.  The issue is that the output is in XML and contains entries which do not contain any SNPs, which 
     47we want to filter out.  Tom showed us how to make a beanshell script which can be added to the workflow.  Currently being tested. 
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