Changes between Version 12 and Version 13 of SatelliteGlycoBiology

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Timestamp:
2009/03/20 14:34:29 (16 years ago)
Author:
kkiyoko
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  • SatelliteGlycoBiology

    v12 v13  
    5050Our workflow thus takes as input a keyword and searches GlycoEpitopeDB for entries matching the keyword.  The retrieved entries are then used to get the glycan structures from each entry in IUPAC format.  A new utility in RINGS was then developed to convert from IUPAC to KCF format.  In an additional step, we retrieved similar glycan structures to the converted ones in KCF format.  Both RINGS and GlycoEpitope will continue to develop other web services with which to build workflows. 
    5151 
    52 The disease-related workflow was able to retrieve Hinv entries containing the OMIM Ids which were retrieved from OMIM for entries containing a particular keyword.  The issue is that the output is in XML and contains entries which do not contain any SNPs, which 
     52The disease-related workflow was able to retrieve H-Inv entries containing the OMIM Ids which were retrieved from OMIM for entries containing a particular keyword.  The issue is that the output is in XML and contains entries which do not contain any SNPs, which 
    5353we want to filter out.  Tom showed us how to make a beanshell script which can be added to the workflow, and it worked! 
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