Changes between Version 9 and Version 10 of SatelliteGlycoBiology

Timestamp:

2009/03/20 14:28:00 (16 years ago)

Author:

kkiyoko

Comment:

--

SatelliteGlycoBiology

@@ -41 +41 @@
 ==== Summary ====
 
-It took longer than expected, but we were able to develop the glycan structure workflow with an additional step: retrieve similar
-glycan structures to the retrieved ones.  GlycoEpitope will continue to develop other web services with which to build workflows.
+It took longer than expected, but we were able to create a BioMoby web service in GlycoEpitope.
+ * GlycoEpitope
+   * getGlycoEpitopeIDfromKeyword
+   * getIUPACfromGlycoEpitopeID
+ * RINGS
+   * getKCFfromIUPAC
+
+Our workflow thus takes as input a keyword and searches GlycoEpitopeDB for entries matching the keyword.  The retrieved entries are then used to get the glycan structures from each entry in IUPAC format.  A new utility in RINGS was then developed to convert from IUPAC to KCF format.  In an additional step, we retrieved similar glycan structures to the converted ones in KCF format.  Both RINGS and GlycoEpitope will continue to develop other web services with which to build workflows.
 
 The disease-related workflow was able to retrieve Hinv entries containing the OMIM Ids which were retrieved from OMIM for entries containing a particular keyword.  The issue is that the output is in XML and contains entries which do not contain any SNPs, which