Satellite meeting for G-language development

Topics

Development of REST/SOAP web services for G-language Genome Analysis Environment

Participants

• Kazuharu Arakawa
• Nobuhiro Kido
• Kazuki Oshita

REST

genome flatfile access

• Base URL (list of available genomes):
   http://www.g-language.org/gb/
• Syntax:
  

http://www.g-language.org/gb/[genome]/[gene]/[feature]

• Nucleotide composition
  

http://www.g-language.org/gb/[genome]

• examples:

 http://www.g-language.org/gb/ecoli (G-language preset genome)
 http://www.g-language.org/gb/NC_000908 (NCBI RefSeq? accession)
 http://www.g-language.org/gb/B619CD (G-language REST temporary reference id)

• Genes
  

http://www.g-language.org/gb/[genome]/[gene]

• examples:

 http://www.g-language.org/gb/ecoli/recA (common gene name)
 http://www.g-language.org/gb/ecoli/b2699 (canonical gene name / locus tag)
 http://www.g-language.org/gb/ecoli/FEATURE5804 (G-language feature id)
 http://www.g-language.org/gb/ecoli/CDS2646 (G-language CDS id)

• features
  

http://www.g-language.org/gb/[genome]/[gene]/[feature]

• examples:

 http://www.g-language.org/gb/ecoli/recA/gene (gene name)
 http://www.g-language.org/gb/ecoli/recA/translation (amino acid sequence)
 http://www.g-language.org/gb/ecoli/*/translation (amino acid sequence of all genes)

SOAP