Satellite meeting for G-language development

Topics

Development of REST/SOAP web services for G-language Genome Analysis Environment

Participants

• Kazuharu Arakawa
• Nobuhiro Kido
• Kazuki Oshita

REST

genome flatfile access

• Base URL (list of available genomes):

 http://www.g-language.org/gb/

• Nucleotide composition  http://www.g-language.org/gb/[genome]
  • examples:

 http://www.g-language.org/gb/ecoli (G-language preset genome)  http://www.g-language.org/gb/NC_000908 (NCBI RefSeq? accession)  http://www.g-language.org/gb/B619CD (G-language REST temporary reference id)

• Gene features  http://www.g-language.org/gb/ecoli/[gene]
  • examples:

 http://www.g-language.org/gb/ecoli/recA (common gene name)  http://www.g-language.org/gb/ecoli/b2699 (canonical gene name / locus tag)  http://www.g-language.org/gb/ecoli/FEATURE5804 (G-language feature id)  http://www.g-language.org/gb/ecoli/CDS2646 (G-language CDS id)

SOAP