= Satellite meeting for G-language development =

== Topics ==

Development of REST/SOAP web services for G-language Genome Analysis Environment

== Participants ==

 * Kazuharu Arakawa
 * Nobuhiro Kido
 * Kazuki Oshita

== REST ==

=== genome flatfile access ===

 * Base URL (list of available genomes):[[BR]]
   http://www.g-language.org/gb/
 * Syntax:[[BR]]
   * {{{http://www.g-language.org/gb/[genome]/[gene]/[feature]}}}
 * Genomes (nucleotide composition)[[BR]]
   * {{{http://www.g-language.org/gb/[genome]}}}
      * examples:[[BR]]
         * http://www.g-language.org/gb/ecoli (G-language preset genome)[[BR]]
         * http://www.g-language.org/gb/NC_000908 (NCBI RefSeq accession)[[BR]]
         * http://www.g-language.org/gb/B619CD (G-language REST temporary reference id)
 * Genes[[BR]]
   * {{{http://www.g-language.org/gb/[genome]/[gene]}}}
     * examples:[[BR]]
         * http://www.g-language.org/gb/ecoli/recA (common gene name)[[BR]]
         * http://www.g-language.org/gb/ecoli/b2699 (canonical gene name / locus tag)[[BR]]
         * http://www.g-language.org/gb/ecoli/FEATURE5804 (G-language feature id)[[BR]]
         * http://www.g-language.org/gb/ecoli/CDS2646 (G-language CDS id)
 * features[[BR]]
   * {{{http://www.g-language.org/gb/[genome]/[gene]/[feature]}}}
     * examples:[[BR]]
         * http://www.g-language.org/gb/mgen/metX/gene (gene name)[[BR]]
         * http://www.g-language.org/gb/mgen/metX/translation (amino acid sequence)[[BR]]
         * http://www.g-language.org/gb/mgen/*/translation (amino acid sequence of all genes)

=== file upload ===

 * Base URL:[[BR]]
   http://www.g-language.org/gbi/
 * Syntax:[[BR]]
   * POST a file to fileform=file
   * File types are automatically interpreted by the system. Supported formats are: ABI, ACE, ALF, BSML, CTF, EMBL, Entrez Gene, Exp, FastA, FastQ, GCG, GenBank, Phd, PIR, PLN, raw, SCF, SWISS.



== SOAP ==