Changes between Version 38 and Version 39 of SatelliteG-language

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Timestamp:
2009/03/26 22:33:07 (16 years ago)
Author:
gaou
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  • SatelliteG-language

    v38 v39  
    4848== REST == 
    4949 
     50 * Base URL:[[BR]] 
     51   * http://rest.g-language.org/ 
     52 
    5053=== genome flatfile access === 
    5154 
    52  * Base URL (list of available genomes):[[BR]] 
    53    * http://www.g-language.org/gb/ 
     55 * list of available genomes:[[BR]] 
     56   * http://rest.g-language.org/organism_list/ 
    5457 * Syntax:[[BR]] 
    55    * {{{http://www.g-language.org/gb/[genome]/[gene]/[feature]}}} 
     58   * {{{http://rest.g-language.org/[genome]/[gene]/[feature]}}} 
    5659 * Genomes (nucleotide composition)[[BR]] 
    57    * {{{http://www.g-language.org/gb/[genome]}}} 
     60   * {{{http://rest.g-language.org/[genome]}}} 
    5861      * examples:[[BR]] 
    59          * http://www.g-language.org/gb/ecoli (G-language preset genome)[[BR]] 
    60          * http://www.g-language.org/gb/NC_000908 (NCBI RefSeq accession)[[BR]] 
    61          * http://www.g-language.org/gb/B619CD (G-language REST temporary reference id) 
     62         * http://rest.g-language.org/ecoli (G-language preset genome)[[BR]] 
     63         * http://rest.g-language.org/NC_000908 (NCBI RefSeq accession)[[BR]] 
     64         * http://rest.g-language.org/B619CD (G-language REST temporary reference id) 
    6265 * Genes[[BR]] 
    63    * {{{http://www.g-language.org/gb/[genome]/[gene]}}} 
     66   * {{{http://rest.g-language.org/gb/[genome]/[gene]}}} 
    6467     * examples:[[BR]] 
    65          * http://www.g-language.org/gb/ecoli/recA (common gene name)[[BR]] 
    66          * http://www.g-language.org/gb/ecoli/b2699 (canonical gene name / locus tag)[[BR]] 
    67          * http://www.g-language.org/gb/ecoli/FEATURE5804 (G-language feature id)[[BR]] 
    68          * http://www.g-language.org/gb/ecoli/CDS2646 (G-language CDS id) 
     68         * http://rest.g-language.org/ecoli/recA (common gene name)[[BR]] 
     69         * http://rest.g-language.org/ecoli/b2699 (canonical gene name / locus tag)[[BR]] 
     70         * http://rest.g-language.org/ecoli/FEATURE5804 (G-language feature id)[[BR]] 
     71         * http://rest.g-language.org/ecoli/CDS2646 (G-language CDS id) 
    6972 * features[[BR]] 
    70    * {{{http://www.g-language.org/gb/[genome]/[gene]/[feature]}}} 
     73   * {{{http://rest.g-language.org/[genome]/[gene]/[feature]}}} 
    7174     * examples:[[BR]] 
    72          * http://www.g-language.org/gb/mgen/metX/gene (gene name)[[BR]] 
    73          * http://www.g-language.org/gb/mgen/metX/translation (amino acid sequence)[[BR]] 
    74          * http://www.g-language.org/gb/mgen/*/translation (amino acid sequence of all genes) 
     75         * http://rest.g-language.org/mgen/metX/gene (gene name)[[BR]] 
     76         * http://rest.g-language.org/mgen/metX/translation (amino acid sequence)[[BR]] 
     77         * http://rest.g-language.org/mgen/*/translation (amino acid sequence of all genes) 
    7578 
    7679=== file upload === 
    7780 
    7881 * Base URL:[[BR]] 
    79    http://www.g-language.org/gbi/ 
     82   http://rest.g-language.org/upload/ 
    8083 * Syntax 
    8184   * POST a file to fileform=file 
    … …  
    8689=== genome analysis methods === 
    8790 
    88  * Base URL (list of available analysis methods):[[BR]] 
    89    * http://www.g-language.org/gba/ 
     91 * list of available analysis methods:[[BR]] 
     92   * http://rest.g-language.org/method_list/ 
    9093 * Syntax:[[BR]] 
    91    * {{{http://www.g-language.org/gba/[genome]/[method]/[required input (if any)]/[option1=value]/[option2=value]...}}} 
     94   * {{{http://rest.g-language.org/[genome]/[method]/[required input (if any)]/[option1=value]/[option2=value]...}}} 
    9295 * Genome data access[[BR]] 
    9396      * examples:[[BR]] 
    94          * http://www.g-language.org/gba/ecoli/before_startcodon/recA (5' upstream sequence of recA gene)[[BR]] 
    95          * http://www.g-language.org/gba/ecoli/get_geneseq/recA (nucleotide sequence of recA gene)[[BR]] 
    96          * http://www.g-language.org/gba/ecoli/cds (get a list of all feature ids) 
     97         * http://rest.g-language.org/ecoli/before_startcodon/recA (5' upstream sequence of recA gene)[[BR]] 
     98         * http://rest.g-language.org/ecoli/get_geneseq/recA (nucleotide sequence of recA gene)[[BR]] 
     99         * http://rest.g-language.org/ecoli/cds (get a list of all feature ids) 
    97100 * Analysis methods[[BR]] 
    98101     * examples:[[BR]] 
    99          * http://www.g-language.org/gba/ecoli/gcskew (GC skew analysis - produces a graph)[[BR]] 
    100          * http://www.g-language.org/gba/ecoli/gcskew/cumulative=1 (cumulative GC skew)[[BR]] 
    101          * http://www.g-language.org/gba/ecoli/gcskew/at=1/cumulative=1/output=f/ (cumulative AT skew - output as csv data)[[BR]] 
    102          * http://www.g-language.org/gba/ecoli/gcsi (GC Skew Index analysis - single double value) 
     102         * http://rest.g-language.org/ecoli/gcskew (GC skew analysis - produces a graph)[[BR]] 
     103         * http://rest.g-language.org/ecoli/gcskew/cumulative=1 (cumulative GC skew)[[BR]] 
     104         * http://rest.g-language.org/ecoli/gcskew/at=1/cumulative=1/output=f/ (cumulative AT skew - output as csv data)[[BR]] 
     105         * http://rest.g-language.org/ecoli/gcsi (GC Skew Index analysis - single double value) 
    103106  
    104107== SOAP ==