Changes between Version 18 and Version 19 of SatelliteG-language

Timestamp:

2009/03/20 10:34:43 (16 years ago)

Author:

gaou

Comment:

--

SatelliteG-language

@@ -49 +49 @@
    * Returns a unique reference ID for the uploaded file. You can use this ID for the rest of the analysis so that the large file is not transferred over the network.
 
-=== genome flatfile access ===
+=== genome analysis methods ===
 
- * Base URL (list of available genomes):[[BR]]
-   * http://www.g-language.org/gb/
+ * Base URL (list of available analysis methods):[[BR]]
+   * http://www.g-language.org/gba/
  * Syntax:[[BR]]
-   * {{{http://www.g-language.org/gb/[genome]/[gene]/[feature]}}}
- * Genomes (nucleotide composition)[[BR]]
-   * {{{http://www.g-language.org/gb/[genome]}}}
+   * {{{http://www.g-language.org/gb/[genome]/[method]/[required input (if any)]/[option1=value]/[option2=value]...}}}
+ * Genome data access[[BR]]
       * examples:[[BR]]
-         * http://www.g-language.org/gb/ecoli (G-language preset genome)[[BR]]
-         * http://www.g-language.org/gb/NC_000908 (NCBI RefSeq accession)[[BR]]
-         * http://www.g-language.org/gb/B619CD (G-language REST temporary reference id)
- * Genes[[BR]]
-   * {{{http://www.g-language.org/gb/[genome]/[gene]}}}
+         * http://www.g-language.org/gba/ecoli/before_startcodon/recA (5' upstream sequence of recA gene)[[BR]]
+         * http://www.g-language.org/gba/ecoli/get_geneseq/recA (nucleotide sequence of recA gene)[[BR]]
+         * http://www.g-language.org/gba/ecoli/cds (get a list of all feature ids)
+ * Analysis methods[[BR]]
      * examples:[[BR]]
-         * http://www.g-language.org/gb/ecoli/recA (common gene name)[[BR]]
-         * http://www.g-language.org/gb/ecoli/b2699 (canonical gene name / locus tag)[[BR]]
-         * http://www.g-language.org/gb/ecoli/FEATURE5804 (G-language feature id)[[BR]]
-         * http://www.g-language.org/gb/ecoli/CDS2646 (G-language CDS id)
- * features[[BR]]
-   * {{{http://www.g-language.org/gb/[genome]/[gene]/[feature]}}}
-     * examples:[[BR]]
-         * http://www.g-language.org/gb/mgen/metX/gene (gene name)[[BR]]
-         * http://www.g-language.org/gb/mgen/metX/translation (amino acid sequence)[[BR]]
-         * http://www.g-language.org/gb/mgen/*/translation (amino acid sequence of all genes)
-
+         * http://www.g-language.org/gb/ecoli/gcskew (GC skew analysis - produces a graph)[[BR]]
+         * http://www.g-language.org/gb/ecoli/gcskew/cumulative=1 (cumulative GC skew)[[BR]]
+         * http://www.g-language.org/gb/ecoli/gcskew/at=1/cumulative=1/output=f/ (cumulative AT skew - output as csv data)[[BR]]
+         * http://www.g-language.org/gb/ecoli/gcsi (GC Skew Index analysis - single double value)
+ 
 == SOAP ==