Satellite meeting for BioRuby? development and documentation

Topics

Miscellaneous things about BioRuby? delvelopment and documentation.

Participants

  • Naohisa Goto
  • Raoul JP Bonnal
  • Toshiaki Katayama
  • Jan Aerts
  • Mitsuteru Nakao

Targets

Date

  • 2009/3/19 17:00-
  • Any time via online :-)

Room

  • 3F Chura Hall

Results

  • Hack
    • New features
      • FASTQ format parser
    • Bug fixes
      • Bio::PubMed?.esearch bug -- fixed by Toshiaki
      • Bio::Fasta::Report problem -- in progress
    • Improvements
      • BioSQL -- Raoul
      • Tutorial -- Pjotrp (remote)
  • Discussion
    • BioRuby? documentation
    • Discussion about next version release
      • Current version is 1.3.0.
      • 1.3.1: Bug fixes and some improvements
        • TogoWS as default data source
        • BioSQL
        • tutorial
      • 1.4.0: New features
        • New web services clients / servers?
        • Large data handling
          • manifest files?
        • Phyloinformatics
          • PhyloXML support -- maybe in GSoC
          • NeXML support -- hopefully to collaborate with MX project
    • BioRuby? publication plan

TODOs

  • Writing documents
  • hack, hack, hack