Changes between Version 72 and Version 73 of SatelliteBigData

Timestamp:

2009/03/20 15:20:45 (16 years ago)

Author:

severin

Comment:

--

SatelliteBigData

@@ -49 +49 @@
  - yes and no: No, for the short reads where the position on a reference seq is known you could just store the position rather than the entire read. Yes, imagine a user find a new unknown SNP at a given position: he will want to get the sequences/quality(?) of all the reads overlapping the mutation for this assembly as well as for the other individuals' genome.    - Pierre                                      
     - this is only true for genome resquencing. for RNA->genome mapping data you do want the read since it can capture RNA modifications which are not the same as a SNP -- jessica
-    - not everything maps to the reference genome. this un-mapped data may be noise and errors, or it may be interesting biology. - jessica          
+    - not everything maps to the reference genome. this un-mapped data may be noise or errors, or it may be interesting biology.  until we are 100% certain, maybe it is best to keep it.
                                              
 == Discussion ==