Changes between Version 7 and Version 8 of DDBJ-KEGG-PDBj
- Timestamp:
- 2009/03/17 17:50:34 (16 years ago)
Legend:
- Unmodified
- Added
- Removed
- Modified
-
DDBJ-KEGG-PDBj
v7 v8 30 30 == Here's a pathway of human == 31 31 [[Image(hsa00010.gif)]] 32 == Pick amino acid sequences for the pathway components == 33 {{{ 34 >comp1 35 ..... 36 >comp2 37 .... 38 >comp3 39 .... 40 }}} 32 41 33 42 == After running blast for each pathway component == 34 43 You will have a list of proteins annotated with species. 35 44 {{{ 36 protein1 species1 evalue... 37 protein2 species2 evalue... 38 protein3 species1 evalue... 39 protein4 species2 evalue... 40 protein5 species3 evalue... 45 Comp1 46 protein1 species1 evalue... 47 protein2 species2 evalue... 48 protein3 species1 evalue... 49 protein4 species2 evalue... 50 protein5 species3 evalue... 51 ... 52 Comp2 53 protein1 species1 evalue... 41 54 ... 42 55 }}} 43 56 44 == Group blast hits by species == 57 == For each species, select the top hit for each pathway component == 58 That is, filling the Homologous Components Matrix. 59 In doing so, just select the top hit for each component for each species. 45 60 {{{ 46 species1 47 protein1 48 protein3 61 species1 species2 species3 ... 62 ------+--------------------------- 63 comp1 | protein11 protein12 ... 64 comp2 | protein21 protein22 protein23 ... 65 comp3 | ... 66 comp4 | ... 67 .... 68 }}} 49 69 50 species251 protein252 protein453 54 species355 protein556 57 ...
