Changes between Version 23 and Version 24 of DDBJ-KEGG-PDBj

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Timestamp:
2009/03/19 17:33:58 (15 years ago)
Author:
akinjo
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  • DDBJ-KEGG-PDBj

    v23 v24  
    113113[[Timestamp]] 
    114114== Output format == 
    115  1. After  
     115 1. After Part II is finished, we have a phylogenetic profile. 
     116{{{ 
     117\tab species1\tab species2\tab species3 ... ....... speciesN 
     118comp1\tab protein11\tab protein12   ... 
     119comp2\tab protein21\tab protein22   protein23 ... 
     120comp3\tab ... 
     121comp4\tab ... 
     122.... 
     123compM 
     124}}} 
     125where comp1, comp2, ... are KEGG gene ID's, species1, species2, ... are species names, and protein11, protein12, etc. are UniProt ID's. 
    116126 
     127 2. After Part II is finished, we have a interaction network.  
     128{{{ 
     129>species1 
     130c1\tab c2\tab PDBID\tab chainID1\tab chainID2 
     131c2\tab c4\tab PDBID\tab chainID2\tab chainID4 
     132// 
     133>species2 
     134c1\tab c3\tab PDBID\tab chainID1\tab chainID3 
     135... 
     136// 
     137>speciesN 
     138.. 
     139// 
     140}}} 
     141