Changes between Version 1 and Version 2 of DDBJ-KEGG-PDBj

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Timestamp:
2009/03/17 17:04:28 (16 years ago)
Author:
akinjo
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  • DDBJ-KEGG-PDBj

    v1 v2  
    66Finding pathway components (enzymes) that are expected to form physical contacts as judged from homologous protein structures. 
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     8== The procedure == 
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     101. Pick a pathway of a specific organism, say Glycolysis / Gluconeogenesis pathway of Homo sapiens (human). 
     111. Get all the amino acid sequences of that pathway component. 
     121. Run blast for each sequence against UniProt(SwissProt / TrEMBL). 
     131. Group the blast results according to biological species (s1, s2, ..., sn). 
     14