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Changes between Version 3 and Version 4 of DDBJ-KEGG-PDBj/Draft

v3	v4
15	15	(7) Output image files highlighting the conserved and interacting proteins in the pathway map.
16	16
17		To implement the workflow outlined above, we have used the SOAP and REST APIs of DDBJ (http://www.ddbj.nig.ac.jp/), KEGG (http://www.genome.jp/) and PDBj (http://www.pdbj.org/). The workflow can be divided into three parts corresponding to the three web sites. Part I consists of steps (1) and (2) (using KEGG API), Part II of steps (3) and (4) (using DDBJ WABI), Part III of steps (5) and (6) (using PDBj sequence navigator SOAP); step (7) is handled by a customized program on the client side.
	17	To implement the workflow outlined above, we have used the SOAP and REST APIs of DDBJ (http://www.ddbj.nig.ac.jp/), KEGG (http://www.genome.jp/) and PDBj (http://www.pdbj.org/). The workflow can be divided into three parts corresponding to the three web sites. Part I consists of steps (1) and (2) (using KEGG API), Part II of steps (3) and (4) (using DDBJ WABI), Part III of steps (5) and (6) (using PDBj sequence navigator SOAP); step (7) is handled by a customized program on the client side. The main part of the client program was written in Java, but we were forced to switch to Perl for PDBj's sequence navigator due to a version incompatibility in SOAP libraries. Image manipulation programs were written in Perl and Ruby.