Version 3 (modified by syed, 16 years ago)

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BioMart - Data Integration and Interoperability

BioMart is a data-management and integration system for large scale biological data.

Project page:  http://www.biomart.org

Team

  • Arek Kasprzyk
  • Syed Haider

Goals

  • To collaborate with data visualisation & workflow system writers towards better integration of BioMart resources over the web services.

Summary

1- Collaborated with Galaxy, GBrowse and Cytoscape developers for an improved BioMart Client to access BioMart databases using BioMart web services.

2- Hands-on session on how to use BioMart and which databases are available on BioMart Central Portal  http://www.biomart.org/biomart/martview.

Hands-on

Room

  • Chura Hall (3F)

Attendess

  • James Taylor
  • Tobias Gattermayer
  • Raoul Bonnal
  • Mitsuteru Nakao
  • Takashi Hatakeyama
  • Atsuko Yamaguchi
  • Kozo Nishida
  • Hong-woo Chun
  • Yasunori Yamamoto
  • Todd Harris
  • Shin Kawano

Notes

- have to know dataset, filter, attribute
- can use Perl API, URL Access, Web service access (REST as well as SOAP)..
- MartView?
- DAS access
- can set up in-house server and federate your data with publicly available databases such as:  http://www.biomart.org/biomart/martview