SatelliteGlycoBiology: glycoepitope_rings_wf.t2flow

File glycoepitope_rings_wf.t2flow, 27.4 KB (added by shuo50, 14 years ago)
Line 
1<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1"><dataflow id="dfa53883-3dcc-48bf-98e8-061690f3a2e1" role="top"><name>dataflow0</name><inputPorts><port><name>Keyword</name><depth>0</depth><granularDepth>0</granularDepth></port></inputPorts><outputPorts><port><name>KCf</name></port><port><name>KEGG_id</name></port><port><name>IUPAC</name></port><port><name>GlycoEpitopeID</name></port></outputPorts><processors><processor><name>getGlycoEpitopeIDfromKeyword</name><inputPorts><port><name>String(Input)</name><depth>0</depth></port></inputPorts><outputPorts><port><name>GlycomicsObject(Collection - 'Result')</name><depth>1</depth><granularDepth>1</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>biomoby-activity</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.activities.biomoby.BiomobyActivity</class><inputMap><map from="String(Input)" to="String(Input)" /></inputMap><outputMap><map from="GlycomicsObject(Collection - 'Result')" to="GlycomicsObject(Collection - 'Result')" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.biomoby.BiomobyActivityConfigurationBean xmlns="">
2  <mobyEndpoint>http://moby.ucalgary.ca/moby/MOBY-Central.pl</mobyEndpoint>
3  <serviceName>getGlycoEpitopeIDfromKeyword</serviceName>
4  <authorityName>www.glyco2.is.ritsumei.ac.jp</authorityName>
5  <secondaries />
6</net.sf.taverna.t2.activities.biomoby.BiomobyActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
7  <maxJobs>1</maxJobs>
8</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="">
9  <backoffFactor>1.0</backoffFactor>
10  <initialDelay>1000</initialDelay>
11  <maxDelay>5000</maxDelay>
12  <maxRetries>0</maxRetries>
13</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port name="String(Input)" depth="0" /></cross></strategy></iteration></iterationStrategyStack></processor><processor><name>getIUPACfromGlycoEpitopeID</name><inputPorts><port><name>GlycomicsObject(GlycomicsObject)</name><depth>0</depth></port></inputPorts><outputPorts><port><name>IUPAC(IUPAC)</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>biomoby-activity</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.activities.biomoby.BiomobyActivity</class><inputMap><map from="GlycomicsObject(GlycomicsObject)" to="GlycomicsObject(GlycomicsObject)" /></inputMap><outputMap><map from="IUPAC(IUPAC)" to="IUPAC(IUPAC)" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.biomoby.BiomobyActivityConfigurationBean xmlns="">
14  <mobyEndpoint>http://moby.ucalgary.ca/moby/MOBY-Central.pl</mobyEndpoint>
15  <serviceName>getIUPACfromGlycoEpitopeID</serviceName>
16  <authorityName>www.glyco2.is.ritsumei.ac.jp</authorityName>
17  <secondaries />
18</net.sf.taverna.t2.activities.biomoby.BiomobyActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
19  <maxJobs>1</maxJobs>
20</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="">
21  <backoffFactor>1.0</backoffFactor>
22  <initialDelay>1000</initialDelay>
23  <maxDelay>5000</maxDelay>
24  <maxRetries>0</maxRetries>
25</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port name="GlycomicsObject(GlycomicsObject)" depth="0" /></cross></strategy></iteration></iterationStrategyStack></processor><processor><name>getKCFfromIUPAC</name><inputPorts><port><name>IUPAC(input)</name><depth>0</depth></port></inputPorts><outputPorts><port><name>KCF(output)</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>biomoby-activity</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.activities.biomoby.BiomobyActivity</class><inputMap><map from="IUPAC(input)" to="IUPAC(input)" /></inputMap><outputMap><map from="KCF(output)" to="KCF(output)" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.biomoby.BiomobyActivityConfigurationBean xmlns="">
26  <mobyEndpoint>http://moby.ucalgary.ca/moby/MOBY-Central.pl</mobyEndpoint>
27  <serviceName>getKCFfromIUPAC</serviceName>
28  <authorityName>rings.t.soka.ac.jp</authorityName>
29  <secondaries />
30</net.sf.taverna.t2.activities.biomoby.BiomobyActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
31  <maxJobs>1</maxJobs>
32</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="">
33  <backoffFactor>1.0</backoffFactor>
34  <initialDelay>1000</initialDelay>
35  <maxDelay>5000</maxDelay>
36  <maxRetries>0</maxRetries>
37</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port name="IUPAC(input)" depth="0" /></cross></strategy></iteration></iterationStrategyStack></processor><processor><name>String</name><inputPorts><port><name>value</name><depth>0</depth></port></inputPorts><outputPorts><port><name>mobyData</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>biomoby-activity</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.activities.biomoby.BiomobyObjectActivity</class><inputMap><map from="value" to="value" /></inputMap><outputMap><map from="mobyData" to="mobyData" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.biomoby.BiomobyObjectActivityConfigurationBean xmlns="">
38  <mobyEndpoint>http://moby.ucalgary.ca/moby/MOBY-Central.pl</mobyEndpoint>
39  <serviceName>String</serviceName>
40  <authorityName />
41</net.sf.taverna.t2.activities.biomoby.BiomobyObjectActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
42  <maxJobs>1</maxJobs>
43</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="">
44  <backoffFactor>1.0</backoffFactor>
45  <initialDelay>1000</initialDelay>
46  <maxDelay>5000</maxDelay>
47  <maxRetries>0</maxRetries>
48</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port name="value" depth="0" /></cross></strategy></iteration></iterationStrategyStack></processor><processor><name>Parse Moby Data(GlycomicsObject)</name><inputPorts><port><name>mobyData('GlycomicsObject')</name><depth>0</depth></port></inputPorts><outputPorts><port><name>id</name><depth>1</depth><granularDepth>1</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>biomoby-activity</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.activities.biomoby.MobyParseDatatypeActivity</class><inputMap><map from="mobyData('GlycomicsObject')" to="mobyData('GlycomicsObject')" /></inputMap><outputMap><map from="id" to="id" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.biomoby.MobyParseDatatypeActivityConfigurationBean xmlns="">
49  <datatypeName>GlycomicsObject</datatypeName>
50  <registryEndpoint>http://moby.ucalgary.ca/moby/MOBY-Central.pl</registryEndpoint>
51  <articleNameUsedByService>Result</articleNameUsedByService>
52</net.sf.taverna.t2.activities.biomoby.MobyParseDatatypeActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
53  <maxJobs>1</maxJobs>
54</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="">
55  <backoffFactor>1.0</backoffFactor>
56  <initialDelay>1000</initialDelay>
57  <maxDelay>5000</maxDelay>
58  <maxRetries>0</maxRetries>
59</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port name="mobyData('GlycomicsObject')" depth="0" /></cross></strategy></iteration></iterationStrategyStack></processor><processor><name>Parse Moby Data(IUPAC)</name><inputPorts><port><name>mobyData('IUPAC')</name><depth>0</depth></port></inputPorts><outputPorts><port><name>IUPAC_'sequence'</name><depth>1</depth><granularDepth>1</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>biomoby-activity</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.activities.biomoby.MobyParseDatatypeActivity</class><inputMap><map from="mobyData('IUPAC')" to="mobyData('IUPAC')" /></inputMap><outputMap><map from="IUPAC_'sequence'" to="IUPAC_'sequence'" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.biomoby.MobyParseDatatypeActivityConfigurationBean xmlns="">
60  <datatypeName>IUPAC</datatypeName>
61  <registryEndpoint>http://moby.ucalgary.ca/moby/MOBY-Central.pl</registryEndpoint>
62  <articleNameUsedByService>IUPAC</articleNameUsedByService>
63</net.sf.taverna.t2.activities.biomoby.MobyParseDatatypeActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
64  <maxJobs>1</maxJobs>
65</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="">
66  <backoffFactor>1.0</backoffFactor>
67  <initialDelay>1000</initialDelay>
68  <maxDelay>5000</maxDelay>
69  <maxRetries>0</maxRetries>
70</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port name="mobyData('IUPAC')" depth="0" /></cross></strategy></iteration></iterationStrategyStack></processor><processor><name>Parse Moby Data(KCF)</name><inputPorts><port><name>mobyData('KCF')</name><depth>0</depth></port></inputPorts><outputPorts><port><name>output_'sequence'</name><depth>1</depth><granularDepth>1</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>biomoby-activity</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.activities.biomoby.MobyParseDatatypeActivity</class><inputMap><map from="mobyData('KCF')" to="mobyData('KCF')" /></inputMap><outputMap><map from="output_'sequence'" to="output_'sequence'" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.biomoby.MobyParseDatatypeActivityConfigurationBean xmlns="">
71  <datatypeName>KCF</datatypeName>
72  <registryEndpoint>http://moby.ucalgary.ca/moby/MOBY-Central.pl</registryEndpoint>
73  <articleNameUsedByService>output</articleNameUsedByService>
74</net.sf.taverna.t2.activities.biomoby.MobyParseDatatypeActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
75  <maxJobs>1</maxJobs>
76</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="">
77  <backoffFactor>1.0</backoffFactor>
78  <initialDelay>1000</initialDelay>
79  <maxDelay>5000</maxDelay>
80  <maxRetries>0</maxRetries>
81</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port name="mobyData('KCF')" depth="0" /></cross></strategy></iteration></iterationStrategyStack></processor><processor><name>getSimilarGlycansWithScoreFromKCF</name><inputPorts><port><name>KCF(inputKCF)</name><depth>0</depth></port></inputPorts><outputPorts><port><name>GlycanScore(Collection - 'KEGG_ids')</name><depth>1</depth><granularDepth>1</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>biomoby-activity</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.activities.biomoby.BiomobyActivity</class><inputMap><map from="KCF(inputKCF)" to="KCF(inputKCF)" /></inputMap><outputMap><map from="GlycanScore(Collection - 'KEGG_ids')" to="GlycanScore(Collection - 'KEGG_ids')" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.biomoby.BiomobyActivityConfigurationBean xmlns="">
82  <mobyEndpoint>http://moby.ucalgary.ca/moby/MOBY-Central.pl</mobyEndpoint>
83  <serviceName>getSimilarGlycansWithScoreFromKCF</serviceName>
84  <authorityName>rings.t.soka.ac.jp</authorityName>
85  <secondaries>
86    <entry>
87      <string>limit</string>
88      <string>1</string>
89    </entry>
90  </secondaries>
91</net.sf.taverna.t2.activities.biomoby.BiomobyActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
92  <maxJobs>1</maxJobs>
93</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="">
94  <backoffFactor>1.0</backoffFactor>
95  <initialDelay>1000</initialDelay>
96  <maxDelay>5000</maxDelay>
97  <maxRetries>0</maxRetries>
98</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port name="KCF(inputKCF)" depth="0" /></cross></strategy></iteration></iterationStrategyStack></processor></processors><conditions /><datalinks><datalink><sink type="processor"><processor>getGlycoEpitopeIDfromKeyword</processor><port>String(Input)</port></sink><source type="processor"><processor>String</processor><port>mobyData</port></source></datalink><datalink><sink type="processor"><processor>getIUPACfromGlycoEpitopeID</processor><port>GlycomicsObject(GlycomicsObject)</port></sink><source type="processor"><processor>getGlycoEpitopeIDfromKeyword</processor><port>GlycomicsObject(Collection - 'Result')</port></source></datalink><datalink><sink type="processor"><processor>getKCFfromIUPAC</processor><port>IUPAC(input)</port></sink><source type="processor"><processor>getIUPACfromGlycoEpitopeID</processor><port>IUPAC(IUPAC)</port></source></datalink><datalink><sink type="processor"><processor>String</processor><port>value</port></sink><source type="dataflow"><port>Keyword</port></source></datalink><datalink><sink type="processor"><processor>Parse Moby Data(GlycomicsObject)</processor><port>mobyData('GlycomicsObject')</port></sink><source type="processor"><processor>getGlycoEpitopeIDfromKeyword</processor><port>GlycomicsObject(Collection - 'Result')</port></source></datalink><datalink><sink type="processor"><processor>Parse Moby Data(IUPAC)</processor><port>mobyData('IUPAC')</port></sink><source type="processor"><processor>getIUPACfromGlycoEpitopeID</processor><port>IUPAC(IUPAC)</port></source></datalink><datalink><sink type="processor"><processor>Parse Moby Data(KCF)</processor><port>mobyData('KCF')</port></sink><source type="processor"><processor>getKCFfromIUPAC</processor><port>KCF(output)</port></source></datalink><datalink><sink type="processor"><processor>getSimilarGlycansWithScoreFromKCF</processor><port>KCF(inputKCF)</port></sink><source type="processor"><processor>getKCFfromIUPAC</processor><port>KCF(output)</port></source></datalink><datalink><sink type="dataflow"><port>KCf</port></sink><source type="processor"><processor>Parse Moby Data(KCF)</processor><port>output_'sequence'</port></source></datalink><datalink><sink type="dataflow"><port>KEGG_id</port></sink><source type="processor"><processor>getSimilarGlycansWithScoreFromKCF</processor><port>GlycanScore(Collection - 'KEGG_ids')</port></source></datalink><datalink><sink type="dataflow"><port>IUPAC</port></sink><source type="processor"><processor>Parse Moby Data(IUPAC)</processor><port>IUPAC_'sequence'</port></source></datalink><datalink><sink type="dataflow"><port>GlycoEpitopeID</port></sink><source type="processor"><processor>Parse Moby Data(GlycomicsObject)</processor><port>id</port></source></datalink></datalinks><annotations /></dataflow></workflow>