Version 41 (modified by jmfernandez, 15 years ago)

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Day 3: Visualization Workgroup Discussion

Hands on: March 19 AM at the seminar room

Tools

  • Expression
    • Cytoscape
    • Genespring
    • TMeV
    • PREP+07
    • bluejay
    • Biocichlid
    • eeDB
    • GenoDive (maybe ..)

Usecase/Data

  • Cytoscape
  • ??
    • 1000genomes.org: displaying SNP locations of the individuals (which reference ?) ? status on dbSNP ? Is it a 'true' snp : the user wants to 'see' the short reads overlapping this variation
  • E-Cell 3D
    • show dynamics of cellular simulations as well as the network
    • debug a simulation model - a molecule could be depleted or too concentrated, steady-state (balanced flux), rhythms
    • looking at the overall behavior
  • Genome Projector
    • look at a feature of interest from several different perspectives (zoom level + context)
    • overlay data