Changes between Version 45 and Version 46 of VisualizationWg

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Timestamp:
2009/03/19 12:16:47 (15 years ago)
Author:
kozo-ni
Comment:

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  • VisualizationWg

    v45 v46  
    1313 
    1414 * Expression 
    15   * Cytoscape 
     15  * Cytoscape * Cytoscape 
     16   * kozo-ni's usecase 
     17     * retrieve a organism's all metabolic reactions from KEGG 
     18     * convert node format from [compound -> enzyme -> compound] to [compound -> compound] or [enzyme -> enzyme] like following paper 
     19       * http://bioinformatics.oxfordjournals.org/cgi/content/full/22/14/1767 
     20     * calculate betweeneth and find bottlenecks (currently I use CentiScaPe plugin or igraph[R library]) 
     21     * map gene expression to enzyme 
    1622  * Genespring 
    1723  * TMeV 
    … …  
    5056       * get an organism's all metabolic reactions from KEGG 
    5157       * draw enzyme or compound centric network. (In enzyme centric network, enzyme nodes share a common compound. In compound centric network, compound nodes share a common enzyme.) 
     58       * time-series expression mapping function 
     59     * difficulty 
     60       * blah,blah,blah  
    5261 * ?? 
    5362   * 1000genomes.org: displaying SNP locations of the individuals (which reference ?) ? status on dbSNP ? Is it a 'true' snp : the user wants to 'see' the short reads overlapping this variation