Changes between Version 26 and Version 27 of SatelliteVisualization

Show
Ignore:
Timestamp:
2009/03/20 12:18:38 (15 years ago)
Author:
isaacyho
Comment:

--

Legend:

Unmodified
Added
Removed
Modified
  • SatelliteVisualization

    v26 v27  
    2525 * Shinobu Okamoto ( so at kazusa.or.jp -- !GenoDive) 
    2626 * Kunihiro Nishimura (kuni at cyber.t.u-tokyo.ac.jp -- !GenoDive) 
     27 * Isaac Ho ( iyho@lbl.gov -- JGI / UCSF ) 
    2728 * Add yourself! :) 
    2829 
     
    9091== Results == 
    9192 * Generic ID mapping for GenMAPP Data Import plugin ( by Isaac Ho / UCSF ) 
    92     GenMAPP-CS is a next-generation implementation of GenMAPP, a metabolic pathway visualization tool, as a set of plugins for Cytoscape.  This week I worked on creating a way to map the ids of any network based on GenMAPP-supported data libraries ( e.g, KEGG, Affy, Ensembl ) to the ids of any expression data based on these libraries.  The solution involves converting all ids to Ensembl IDs upon import, and calling a webservice on GenMAPP's services which are tied to their MySQL dbs.  Kei Ono and I collaborated briefly in discussing the best place in the plugin code to place the responsibility for id conversion. 
     93    GenMAPP-CS is a next-generation implementation of GenMAPP, a metabolic pathway visualization tool, as a set of plugins for Cytoscape.  This week I worked on creating a way to map the ids of any network based on GenMAPP-supported data libraries ( e.g, KEGG, Affy, Ensembl ) to the ids of any expression data based on these libraries.  The solution involves converting all ids to Ensembl IDs upon import by calling a webservice on GenMAPP's servers which query their MySQL dbs.  Kei Ono and I discussed issues such as the best place in the plugin code to place the responsibility for id conversion. 
    9394 * How to create Processing OSGi bundle (Japanese) 
    9495   * http://d.hatena.ne.jp/kozo-ni/20090318#1237335991