Changes between Version 22 and Version 23 of SatelliteVisualization

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Timestamp:
2009/03/20 11:17:00 (15 years ago)
Author:
isaacyho
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  • SatelliteVisualization

    v22 v23  
    8989 
    9090== Results == 
    91  
     91 * Generic ID mapping for GenMAPP Data Import plugin ( by Isaac Ho / UCSF ) 
     92    GenMAPP-CS is a next-generation implementation of GenMAPP, a metabolic pathway visualization tool, as a set of plugins for Cytoscape.  This week I worked on creating a way to map the ids of any network based on GenMAPP-supported data libraries ( e.g, KEGG, Affy, Ensembl ) to the ids of any expression data based on these libraries.  The solution involves converting all ids to Ensembl IDs upon import, and calling a webservice on GenMAPP's services which are tied to their MySQL dbs.  Kei Ono and I collaborated briefly in discussing the best place in the plugin code to place the responsibility for id conversion. 
    9293 * How to create Processing OSGi bundle (Japanese) 
    9394   * http://d.hatena.ne.jp/kozo-ni/20090318#1237335991