Changes between Version 5 and Version 6 of SatelliteUseCases

Show
Ignore:
Timestamp:
2009/03/20 00:01:55 (15 years ago)
Author:
vachiranee
Comment:

--

Legend:

Unmodified
Added
Removed
Modified
  • SatelliteUseCases

    v5 v6  
    4040== Notes == 
    4141 
    42 Data for testing 
    43 -SNPs, Affy provided by Prof.Kim 
    44     SNPs data come from Affymatrix chip of stroke patients and normal people (contain 262,338 SNPs) 
     42'''Data for testing''' 
     43 
     441) SNPs data contain 262,338 SNPs (Stroke patient vs. normal) from Affymetrix GeneChip (provided by Prof.Kim) 
     452) Multifasta format of amino acid sequences of 53 genes which are located at 4p15 (disease map locus of one form of epilepsy) (provided by Vachiranee) 
     463) Multifasta format of nucleotide sequences (provided by Riu) 
     474) Genome data (provided by Takeshi) 
     48 
     49''' 
     50Software'''  
     51 
     521) BioMart 
     532) Galaxy 
     543) jORCA 
     554) ANNOTATOR 
     56 
    4557   
    46     - ANNOTATOR currently cannot analyse on SNPs data directly 
     58ANNOTATOR currently cannot analyse on SNPs data directly 
    4759    - Galaxy (http://galaxyproject.org) and RGenetics (http://rgenetics.org/) 
    4860        quality control, ancestry, case-control analysis, tdt, oter statistical tests