Changes between Version 45 and Version 46 of SatelliteUseCases

Show
Ignore:
Timestamp:
2009/03/20 15:54:58 (15 years ago)
Author:
shuichi
Comment:

--

Legend:

Unmodified
Added
Removed
Modified
  • SatelliteUseCases

    v45 v46  
    129129=== Requests from users to developper === 
    130130 
    131  * (TO: [http://www.ebi.ac.uk/intact IntAct], Cytoscape) [[BR]] 
     131====TO: [http://www.ebi.ac.uk/intact IntAct], Cytoscape) ==== 
    132132It would be nice if user can retrive PPIs which are expressed in any tissues by using option function. (From: Vachiranee)[[BR]] 
    133133 
    134 At this moment the only way that Bruno@!IntAct knows of doing this is to get the list of proteins from a specific tissue (using [http://www.ebi.ac.uk/pride PRIDE]) and then using the list of proteins accessions to find PPIs in the molecular interaction databases, such as [http://www.ebi.ac.uk/intact IntAct]. If there is interest, we (!IntAct) could find a way to include this option in a future release. 
     134   *At this moment the only way that Bruno@!IntAct knows of doing this is to get the list of proteins from a specific tissue (using [http://www.ebi.ac.uk/pride PRIDE]) and then using the list of proteins accessions to find PPIs in the molecular interaction databases, such as [http://www.ebi.ac.uk/intact IntAct]. If there is interest, we (!IntAct) could find a way to include this option in a future release. 
    135135 
    136  * (TO: ANNOTATOR)[[BR]]  
    137 {{{ 
    138 In the conversation with mostly biology-oriented participants of the Hackathon,[[BR]] 
    139 we found the following requests for ANNOTATOR to suit their needs:[[BR]] 
    140 }}} 
     136==== TO: ANNOTATOR ==== 
     137 
     138 * In the conversation with mostly biology-oriented participants of the Hackathon, we found the following requests for ANNOTATOR to suit their needs 
     139 
    141140 
    142141   * Ability to do batch jobs, i.e. large number of proteins annotated by our software (request came from many)[[BR]] 
     
    147146   * Ability to save results of analysis as xml format for further analysis[[BR]] 
    148147 
    149  * (TO: Galaxy)[[BR]] 
    150    * I'd like to input the list of ID on galaxy (such as Gene ID, IPR No.) to text form of biomart filter. 
     148==== TO: Galaxy ==== 
     149 * I'd like to input the list of ID on galaxy (such as Gene ID, IPR No.) to text form of biomart filter.