Changes between Version 40 and Version 41 of SatelliteUseCases

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Timestamp:
2009/03/20 15:47:02 (15 years ago)
Author:
shuichi
Comment:

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  • SatelliteUseCases

    v40 v41  
    129129=== Requests from users to developper === 
    130130 
    131 *(TO: [http://www.ebi.ac.uk/intact IntAct], Cytoscape) [[BR]] 
     131 * (TO: [http://www.ebi.ac.uk/intact IntAct], Cytoscape) [[BR]] 
    132132It would be nice if user can retrive PPIs which are expressed in any tissues by using option function. (From: Vachiranee)[[BR]] 
    133133 
    134134At this moment the only way that Bruno@!IntAct knows of doing this is to get the list of proteins from a specific tissue (using [http://www.ebi.ac.uk/pride PRIDE]) and then using the list of proteins accessions to find PPIs in the molecular interaction databases, such as [http://www.ebi.ac.uk/intact IntAct]. If there is interest, we (!IntAct) could find a way to include this option in a future release. 
    135135 
    136 *(TO: ANNOTATOR)[[BR]]  
     136 * (TO: ANNOTATOR)[[BR]]  
    137137In the conversation with mostly biology-oriented participants of the Hackathon,[[BR]] 
    138138we found the following requests for ANNOTATOR to suit their needs:[[BR]] 
     
    145145- Ability to save results of analysis as xml format for further analysis[[BR]] 
    146146 
    147 *(TO: Galaxy)[[BR]] 
     147 * (TO: Galaxy)[[BR]] 
    148148- I'd like to input the list of ID on galaxy (such as Gene ID, IPR No.) to text form of biomart filter.