Version 5 (modified by ryamasi, 15 years ago)

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Satellite meeting for Sequence analysis tools from the next generation sequencer

Topics

To share our knowledges about sequence analysis tools. Please write what you know about the tools.

Mapping tools

Maq
ELAND
 BOWTIE Ultra-short reads, Burrows-Wheeler index.
Lasergene
GSrapper
 SHRiMP supports letter-space (454/Solexa), color-space (Solid) and Helicos 2-pass space. Spaced-seeds followed by S-W.
 Lastz Blast(z) variant. Has parameter settings tuned for 454 and Solexa mapping for both reference based assembly and variant discovery.

Assemble tools

Velvet

Date

Room

Presentations

Notes

Results

TODOs