Changes between Version 9 and Version 10 of SatelliteGlycoBiology

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Timestamp:
2009/03/20 14:28:00 (15 years ago)
Author:
kkiyoko
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  • SatelliteGlycoBiology

    v9 v10  
    4141==== Summary ==== 
    4242 
    43 It took longer than expected, but we were able to develop the glycan structure workflow with an additional step: retrieve similar 
    44 glycan structures to the retrieved ones.  GlycoEpitope will continue to develop other web services with which to build workflows. 
     43It took longer than expected, but we were able to create a BioMoby web service in GlycoEpitope. 
     44 * GlycoEpitope 
     45   * getGlycoEpitopeIDfromKeyword 
     46   * getIUPACfromGlycoEpitopeID 
     47 * RINGS 
     48   * getKCFfromIUPAC 
     49 
     50Our workflow thus takes as input a keyword and searches GlycoEpitopeDB for entries matching the keyword.  The retrieved entries are then used to get the glycan structures from each entry in IUPAC format.  A new utility in RINGS was then developed to convert from IUPAC to KCF format.  In an additional step, we retrieved similar glycan structures to the converted ones in KCF format.  Both RINGS and GlycoEpitope will continue to develop other web services with which to build workflows. 
    4551 
    4652The disease-related workflow was able to retrieve Hinv entries containing the OMIM Ids which were retrieved from OMIM for entries containing a particular keyword.  The issue is that the output is in XML and contains entries which do not contain any SNPs, which