Version 9 (modified by gaou, 15 years ago)

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Satellite meeting for G-language development

Topics

Development of REST/SOAP web services for G-language Genome Analysis Environment

Participants

  • Kazuharu Arakawa
  • Nobuhiro Kido
  • Kazuki Oshita

REST

genome flatfile access

http://www.g-language.org/gb/[genome]/[gene]/[feature]

  • Nucleotide composition

http://www.g-language.org/gb/[genome]

  • examples:

 http://www.g-language.org/gb/ecoli (G-language preset genome)
 http://www.g-language.org/gb/NC_000908 (NCBI RefSeq? accession)
 http://www.g-language.org/gb/B619CD (G-language REST temporary reference id)

  • Genes

http://www.g-language.org/gb/[genome]/[gene]

  • examples:

 http://www.g-language.org/gb/ecoli/recA (common gene name)
 http://www.g-language.org/gb/ecoli/b2699 (canonical gene name / locus tag)
 http://www.g-language.org/gb/ecoli/FEATURE5804 (G-language feature id)
 http://www.g-language.org/gb/ecoli/CDS2646 (G-language CDS id)

  • features

http://www.g-language.org/gb/[genome]/[gene]/[feature]

  • examples:

 http://www.g-language.org/gb/ecoli/recA/gene (gene name)
 http://www.g-language.org/gb/ecoli/recA/translation (amino acid sequence)
 http://www.g-language.org/gb/ecoli/*/translation (amino acid sequence of all genes)

SOAP

Attachments