Changes between Version 18 and Version 19 of SatelliteG-language

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Timestamp:
2009/03/20 10:34:43 (15 years ago)
Author:
gaou
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  • SatelliteG-language

    v18 v19  
    4949   * Returns a unique reference ID for the uploaded file. You can use this ID for the rest of the analysis so that the large file is not transferred over the network. 
    5050 
    51 === genome flatfile access === 
     51=== genome analysis methods === 
    5252 
    53  * Base URL (list of available genomes):[[BR]] 
    54    * http://www.g-language.org/gb/ 
     53 * Base URL (list of available analysis methods):[[BR]] 
     54   * http://www.g-language.org/gba/ 
    5555 * Syntax:[[BR]] 
    56    * {{{http://www.g-language.org/gb/[genome]/[gene]/[feature]}}} 
    57  * Genomes (nucleotide composition)[[BR]] 
    58    * {{{http://www.g-language.org/gb/[genome]}}} 
     56   * {{{http://www.g-language.org/gb/[genome]/[method]/[required input (if any)]/[option1=value]/[option2=value]...}}} 
     57 * Genome data access[[BR]] 
    5958      * examples:[[BR]] 
    60          * http://www.g-language.org/gb/ecoli (G-language preset genome)[[BR]] 
    61          * http://www.g-language.org/gb/NC_000908 (NCBI RefSeq accession)[[BR]] 
    62          * http://www.g-language.org/gb/B619CD (G-language REST temporary reference id) 
    63  * Genes[[BR]] 
    64    * {{{http://www.g-language.org/gb/[genome]/[gene]}}} 
     59         * http://www.g-language.org/gba/ecoli/before_startcodon/recA (5' upstream sequence of recA gene)[[BR]] 
     60         * http://www.g-language.org/gba/ecoli/get_geneseq/recA (nucleotide sequence of recA gene)[[BR]] 
     61         * http://www.g-language.org/gba/ecoli/cds (get a list of all feature ids) 
     62 * Analysis methods[[BR]] 
    6563     * examples:[[BR]] 
    66          * http://www.g-language.org/gb/ecoli/recA (common gene name)[[BR]] 
    67          * http://www.g-language.org/gb/ecoli/b2699 (canonical gene name / locus tag)[[BR]] 
    68          * http://www.g-language.org/gb/ecoli/FEATURE5804 (G-language feature id)[[BR]] 
    69          * http://www.g-language.org/gb/ecoli/CDS2646 (G-language CDS id) 
    70  * features[[BR]] 
    71    * {{{http://www.g-language.org/gb/[genome]/[gene]/[feature]}}} 
    72      * examples:[[BR]] 
    73          * http://www.g-language.org/gb/mgen/metX/gene (gene name)[[BR]] 
    74          * http://www.g-language.org/gb/mgen/metX/translation (amino acid sequence)[[BR]] 
    75          * http://www.g-language.org/gb/mgen/*/translation (amino acid sequence of all genes) 
    76  
     64         * http://www.g-language.org/gb/ecoli/gcskew (GC skew analysis - produces a graph)[[BR]] 
     65         * http://www.g-language.org/gb/ecoli/gcskew/cumulative=1 (cumulative GC skew)[[BR]] 
     66         * http://www.g-language.org/gb/ecoli/gcskew/at=1/cumulative=1/output=f/ (cumulative AT skew - output as csv data)[[BR]] 
     67         * http://www.g-language.org/gb/ecoli/gcsi (GC Skew Index analysis - single double value) 
     68  
    7769== SOAP == 
    7870