Changes between Version 72 and Version 73 of SatelliteBigData

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Timestamp:
2009/03/20 15:20:45 (15 years ago)
Author:
severin
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  • SatelliteBigData

    v72 v73  
    4949 - yes and no: No, for the short reads where the position on a reference seq is known you could just store the position rather than the entire read. Yes, imagine a user find a new unknown SNP at a given position: he will want to get the sequences/quality(?) of all the reads overlapping the mutation for this assembly as well as for the other individuals' genome.    - Pierre                                       
    5050    - this is only true for genome resquencing. for RNA->genome mapping data you do want the read since it can capture RNA modifications which are not the same as a SNP -- jessica 
    51     - not everything maps to the reference genome. this un-mapped data may be noise and errors, or it may be interesting biology. - jessica           
     51    - not everything maps to the reference genome. this un-mapped data may be noise or errors, or it may be interesting biology.  until we are 100% certain, maybe it is best to keep it. 
    5252                                              
    5353== Discussion ==