Changes between Version 61 and Version 62 of SatelliteBigData

Show
Ignore:
Timestamp:
2009/03/20 14:52:27 (15 years ago)
Author:
severin
Comment:

--

Legend:

Unmodified
Added
Removed
Modified
  • SatelliteBigData

    v61 v62  
    4848 - yes, there is interesting biology in there and comparing our new experiments against existing knowledge is needed, but currently this requires us to download data out of SRA and into our local integration systems - jessica  
    4949 - yes and no: No, for the short reads where the position on a reference seq is known you could just store the position rather than the entire read. Yes, imagine a user find a new unknown SNP at a given position: he will want to get the sequences/quality(?) of all the reads overlapping the mutation for this assembly as well as for the other individuals' genome.    - Pierre                                       
    50     - this is only true for genome resquencing. for RNA->genome mapping data you do want the read since it can capture RNA modifications which are not the same as a SNP -- jessica           
     50    - this is only true for genome resquencing. for RNA->genome mapping data you do want the read since it can capture RNA modifications which are not the same as a SNP -- jessica 
     51    - not everything maps to the reference genome. this un-mapped data may be noise and errors, or it may be interesting biology. - jessica           
    5152                                              
    5253== Discussion ==