Changes between Version 8 and Version 9 of DDBJ-KEGG-PDBj

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Timestamp:
2009/03/17 17:56:14 (15 years ago)
Author:
akinjo
Comment:

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  • DDBJ-KEGG-PDBj

    v8 v9  
    5959In doing so, just select the top hit for each component for each species. 
    6060{{{ 
    61                  species1     species2   species3 ... 
    62 ------+--------------------------- 
    63 comp1  | protein11   protein12 ... 
     61          species1   species2   species3 ... ....... speciesN 
     62-------+--------------------------- 
     63comp1  | protein11   protein12   ... 
    6464comp2  | protein21   protein22   protein23 ... 
    6565comp3  | ... 
    6666comp4  | ... 
    6767.... 
     68compM 
    6869}}} 
    6970 
     71== Pick one column and run blast against PDB == 
     72{{{ 
     73for j = 1 to N 
     74  for i = 1 to M 
     75    run blast (protein(i,j) against PDB 
     76}}} 
     77