Changes between Version 3 and Version 4 of DDBJ-KEGG-PDBj/Draft

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Timestamp:
2009/06/29 15:56:39 (12 years ago)
Author:
akinjo
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  • DDBJ-KEGG-PDBj/Draft

    v3 v4  
    1515(7) Output image files highlighting the conserved and interacting proteins in the pathway map. 
    1616 
    17 To implement the workflow outlined above, we have used the SOAP and REST APIs of DDBJ (http://www.ddbj.nig.ac.jp/), KEGG (http://www.genome.jp/) and PDBj (http://www.pdbj.org/). The workflow can be divided into three parts corresponding to the three web sites. Part I consists of steps (1) and (2) (using KEGG API), Part II of steps (3) and (4) (using DDBJ WABI), Part III of steps (5) and (6) (using PDBj sequence navigator SOAP); step (7) is handled by a customized program on the client side. 
     17To implement the workflow outlined above, we have used the SOAP and REST APIs of DDBJ (http://www.ddbj.nig.ac.jp/), KEGG (http://www.genome.jp/) and PDBj (http://www.pdbj.org/). The workflow can be divided into three parts corresponding to the three web sites. Part I consists of steps (1) and (2) (using KEGG API), Part II of steps (3) and (4) (using DDBJ WABI), Part III of steps (5) and (6) (using PDBj sequence navigator SOAP); step (7) is handled by a customized program on the client side. The main part of the client program was written in Java, but we were forced to switch to Perl for PDBj's sequence navigator due to a version incompatibility in SOAP libraries. Image manipulation programs were written in Perl and Ruby.