Version 7 (modified by syed, 15 years ago)

--

BioMart - Data Integration and Interoperability

BioMart is a data-management and integration system for large scale biological data.

Project page:  http://www.biomart.org

Team

  • Arek Kasprzyk
  • Syed Haider

Goals

  • To collaborate with data visualisation & workflow system writers towards better integration of BioMart resources over the web services.

Summary

1- Collaborated with Galaxy,  GBrowse and Cytoscape developers for an improved BioMart Client to access BioMart databases using BioMart web services.

2- Hands-on session on how to use BioMart and which databases are available on BioMart Central Portal  http://www.biomart.org/biomart/martview

Hands-on

Room

  • Chura Hall (3F)

Attendess

  • James Taylor
  • Tobias Gattermayer
  • Raoul Bonnal
  • Mitsuteru Nakao
  • Takashi Hatakeyama
  • Atsuko Yamaguchi
  • Kozo Nishida
  • Hong-woo Chun
  • Yasunori Yamamoto
  • Todd Harris
  • Shin Kawano
  • Takatomo Fujisawa
  • Yunsun Nam

Notes

  • have to know dataset, filter, attribute
  • can use Perl API, URL Access, Web service access (REST as well as SOAP)
  • DAS access

For details, see the use cases featuring BioMart: